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Directed Evolution, Natural Sequestration and Terraforming the Earth
Jamais Cascio, 23 Feb 06

rubisco.jpgCan we avoid climate disaster simply by cutting back radically on the emission of greenhouse gases? Possibly not, and therein lies a problem. Because of the slow cycle time of carbon dioxide in the atmosphere and the thermal inertia of the oceans, we are almost certain to see a continued rise in temperatures over the coming decades even if we were to stop all greenhouse gas emissions tomorrow. It may well be that a temperature increase of just a couple more degrees is enough to kick off a catastrophic shift in climate systems. A wise strategy for dealing with climate disruption, therefore, relies on drastic reductions in carbon output but would need to include careful efforts to extract carbon from the atmosphere and store it for an extended period of time -- and researchers at the Emory University School of Medicine may have figured out a way to do just that.

We've talked about sequestration a few times here, and always with a skeptical eye. Many of the sequestration proposals are efforts to reduce the greenhouse footprint of otherwise carbon-intensive processes, like energy production from coal. Although it relies on carbon capture technologies, this version of sequestration is just another form of carbon emission reduction, no different (from the atmosphere's perspective) from a shift to renewable energy or higher efficiency use. What I'm talking about here is the active reduction of existing atmospheric CO2 -- intentionally decreasing the concentration of carbon dioxide, not just waiting for it to cycle out. It's another example of Terraforming Earth, but arguably one on the less-potentially-disruptive end of the spectrum.

The Emory University group has figured out a way to boost the efficiency of the key carbon dioxide-fixing enzyme in plants five-fold. The enzyme, known as RuBisCO, is a thousand times slower in its processes than most similar enzymes, and plants have to make a lot of it in order to consume usable amounts of CO2; increasing its efficiency means that plants can take in and use much more CO2. Interestingly, the basic process used by the researchers turns many expectations about biotechnology upside-down: directed evolution:

Dr. Matsumura and his colleagues decided to use a process called "directed evolution" which involved isolating and randomly mutating genes, and then inserting the mutated genes into bacteria (in this case Escherichia coli, or E. coli). They then screened the resulting mutant proteins for the fastest and most efficient enzymes. "We decided to do what nature does, but at a much faster pace." Dr. Matsumura says. "Essentially we're using evolution as a tool to engineer the protein."
Because E. coli does not normally participate in photosynthesis or carbon dioxide conversion, it does not usually carry the RuBisCO [carbon dioxide-fixing] enzyme. In this study, Matsumura's team added the genes encoding RuBisCO and a helper enzyme to E. coli, enabling it to change carbon dioxide into consumable energy. The scientists withheld other nutrients from this genetically modified organism so that it would need RuBisCO and carbon dioxide to survive under these stringent conditions.
They then randomly mutated the RuBisCO gene, and added these mutant genes to the modified E. coli. The fastest growing strains carried mutated RuBisCO genes that produced a larger quantity of the enzyme, leading to faster assimilation of carbon dioxide gas.

This isn't what most people think of when talking about transgenic biotechnology. The plant genes are transferred into E. coli not to make the bacteria into a carbon-consuming wonder, but simply to take advantage of the rapid pace of bacterial reproduction. The scientists can get orders of magnitude more generations of bacteria than generations of plants in the same time frame. The most efficient mutation of the RuBisCO gene can in principle then be re-introduced to the plant species.

It's possible that plants with the mutated RuBisCO gene could be deployed as sequestration groves operating, at least theoretically, at five times the carbon uptake speed of natural species. This could turn tree sequestration from a sideshow to a primary carbon mitigation methodology.

As with other Earth-Terraforming ideas, the proliferation of accelerated-CO2-uptake plants would have to be carefully monitored and controlled. The increased carbon capture rate means faster plant growth; this, in turn, could remove nutrients from the soil or require greater water availability than is sustainable. Ideally, the modified trees would have an "off" switch -- likely an engineered dependence upon a chemical not found naturally in the soil medium, the removal of which would make it impossible for the engineered seeds to sprout.

We will face an unpleasant choice in the years to come: the use of potentially-risky methods to prevent an undeniably catastrophic result. Although the risks from the introduction of accelerated-RuBisCO plants are likely minimal -- after all, the enzyme is a descendant of the naturally-occuring version, not an alien introduction -- the need to reduce global carbon concentrations will probably mean deploying such plants well before we can run life cycle tests. We'd want the sequestration plants to be long-lived, so that their eventual death and decay, releasing their captured carbon, will happen after the immediate threat is long past. This means, however, that we won't be able to see exactly how the lives of these trees change with the new version of the enzyme. Under normal circumstances, we'd definitely want to go through a controlled generation or two before widespread deployment.

Sadly, we're not likely to see "normal circumstances" again very soon.

(Via Green Car Congress)

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Comments

Thanks for an extremely interesting and well-written post. I hope I can comment intelligently.

I've been skeptical of exotic proposals like this in the past, and frustrated that they seem to siphon attention and effort from what we can do here and now. But I realize that my view was naive: we're going to need every effort toward energy efficiency we can possibly make, a determined effort to develop alternative energy sources, AND careful terraforming efforts, as well-thought-out as we can make them.

My interest is in how to rank these efforts at the margin - that is, as the next step we can take with our limited time, resources and knowledge. We can't wait for any kind of technological "deus ex machina" - we need to act now. So while news like this is astounding and vital, I hope it won't obscure the need to do the most practical things we can right now. We need to act, then ask again: now what's the most practical, effective thing I can do? Then do it - and so on.

At this vital time to act, whenever I ask what's the next useful thing to do, I keep concluding that it's energy-efficiency improvements. That's a large part of my living: I just spent several days using energy-modeling software to find cost-effective ways to decrease energy requirements in a house I'm designing by a factor of three. That doesn't require anything exotic. Someday, efficiency won't be the next most useful thing to do - but for now, I'm convinced it is.

Sarah Rich's recent post on compact fluorescent lights points to a very powerful here-and-now act. At this moment, that's more vital than Terraforming. Of course we need to plan, and think decades ahead, but for now, the smart thing -at the margin- is to keep doing the R&D on this and other compelling ideas - AND to change those light bulbs.

When the ship is sinking, it's heartening to know that there's a plan to weld a steel plate to the hole - but until then, you better keep bailing.


Posted by: David Foley on 23 Feb 06

That's exactly right, David. Thank you.


Posted by: Jamais Cascio on 23 Feb 06

There's another possibility for stashing carbon away, which will do it for millennia rather than decades:  stuff it into the soil.  This also boosts fertility and nearly eliminates runoff of some nutrients.


Posted by: Engineer-Poet on 23 Feb 06

Corrected link


Posted by: Engineer-Poet on 23 Feb 06

That is a truly weird hack. Man, that is wild.

I hope it's not "wild" in the literal sense, because
a genetically altered plant with souped-up carbon-fixation
would presumably outgrow its unaltered cousins
by a factor of five. Overwhelmed by giant
waves of witchgrass and knotweed, we'd have no
CO2 left and would swiftly freeze to death.

Not that I wouldn't run right out there and plant
some if we're getting four or five New Orleans
every year.

We need a new term-of-art for the willingness
to employ apocalyptic measures when actually
and literally engaged in an apocalypse.


Posted by: Bruce Sterling on 24 Feb 06

Right. And what happened when we dumped stuff into the rivers and lakes which acted as a fertilizer and caused the weeds to grow out of control? How soon they forget!

Like they guy said...thats a really weird hack. Reminds me of those super microbes which would eat oil spills...until somebody thought "hey, what happens if we get that into an open cut?


nahhh...better to be reducing steel production by growing sisal and making car bodies from sisal-resin. (I know, getting rid of cars is better yet...but lets face it...that is harder to do than to change way they are made.)


Ideas are a dime a dozen. Send me a dime...love to hear from you
Bill stag@cyberus.ca



Posted by: Bill Fedun on 24 Feb 06

If superior carbon uptake was that much of an advantage to a plant, you'd expect it to have evolved over the last hundred million years.  There must be some other limiting factor; perhaps the diffusion through the stomata and the associated water loss makes the current enzyme good enough for current conditions.

And if we do get overrun by super-switchgrass, we can always burn it or feed it to ruminants.  The idea of having to eat more steak so that we can keep up with the grass control amuses me.

(FWIW, I'm a long-time Viridian-list reader.)


Posted by: Engineer-Poet on 24 Feb 06

why stuff CO2 in the ground when we can use it as feedstock for making the same products (and others) we get from petroleum today?

the post above suggesting a 1-(or no-) feature solution goes to show you where the status quo of thinking is. the new idea blows the old idea away, again, which is this: a solution or process that satisfies multiple goals at once is highly preferred. (though I will concede that with green house warming, we need all the tools we can use.) For more info, see _Cradle to Cradle_

for better or for worse, there are other factors involved in biomass accumulation in a plant besides RuBisCO catalytic rate... that is just one part of the solution, albeit a very critical one.


Cheers,


Posted by: Kalib Kersh on 11 Mar 06



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